Publications
Computing in Biology, Medicine and Health
2023
2023. Radiology report generation using transformers conditioned with non-imaging data. Imaging Informatics for Healthcare, Research, and Applications 
2023. Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning. SPIE Medical Imaging 2023: Digital and Computational Pathology 
2023. Research Paper: Process Mining and Synthetic Health Data: Reflections and Lessons Learnt. 4th International Conference on Process Mining
2023. Learning disentangled representations for explainable chest x-ray classification using Dirichlet VAEs. Image Processing
2023. 3D shape reconstruction of semi-transparent worms. The IEEE/CVF Conference on Computer Vision and Pattern Recognition 2023
2023. Measuring the impact of COVID-19 on hospital care pathways. 4th International Conference on Process Mining
2023. Deep Physics-Informed Super-Resolution of Cardiac 4D-Flow MRI. Information Processing in Medical Imaging (IPMI 2023)
2023. Mitosis domain generalization in histopathology images — The MIDOG challenge. Medical Image Analysis. 84
2023. Automated detection and delineation of lymph nodes in haematoxylin & eosin stained digitised slides. Journal of Pathology Informatics. 100192-100192 14
2023. Image analysis of cutaneous melanoma histology: a systematic review and meta-analysis. Scientific Reports. 13
2023. Modelling network formation in folded protein hydrogels by cluster aggregation kinetics. Soft Matter. 2780-2791 19.15
2023. An Automated Method for Artifical Intelligence Assisted Diagnosis of Active Aortitis Using Radiomic Analysis of FDG PET-CT Images. Biomolecules. 13.2
2023. Contribution of Shape Features to Intradiscal Pressure and Facets Contact Pressure in L4/L5 FSUs: An In-Silico Study. Annals of Biomedical Engineering. 174-188 51.1
2023. Correction: Contribution of Shape Features to Intradiscal Pressure and Facets Contact Pressure in L4/L5 FSUs: An In-Silico Study. Annals of Biomedical Engineering. 642-642 51.3
2023. High-Throughput 3DRA Segmentation of Brain Vasculature and Aneurysms using Deep Learning. Computer Methods and Programs in Biomedicine. 230
2023. Tumour infiltrating lymphocytes and survival after adjuvant chemotherapy in patients with gastric cancer: post-hoc analysis of the CLASSIC trial. British Journal of Cancer. 2318-2325 128.12
2023. Hemodynamics of thrombus formation in intracranial aneurysms: an in-silico observational study. APL Bioengineering.
2023. RecON: Online learning for sensorless freehand 3D ultrasound reconstruction. Medical Image Analysis. 102810-102810 87
2023. Postoperative mortality and complications in patients with and without pre-operative SARS-CoV-2 infection: a service evaluation of 24 million linked records using OpenSAFELY. Anaesthesia: Peri-operative medicine, critical care and pain. 692-700 78.6
2023. Effect of a hospital command centre on patient safety: An interrupted time series study. BMJ Health and Care Informatics. 30.1
2023. Tasks and Visualizations Used for Data Profiling: A Survey and Interview Study. IEEE Transactions on Visualization and Computer Graphics.
2023. Attainment of NICE blood pressure targets among older people with newly diagnosed hypertension: nationwide linked electronic health records cohort study. Age and Ageing. 52.5
2023. A monolithic optimal control method for displacement tracking of Cosserat rod with application to reconstruction of C. elegans locomotion. Computational Mechanics. 409-432 71
2023. Generating virtual patients of high-resolution MR angiography from non-angiographic multi-contrast MRIs for In-silico trials. Medical Image Analysis. 87
2022
2022. Predicting Myocardial Infarction Using Retinal OCT Imaging. In: Medical Image Understanding and Analysis.
2022. Image imputation in cardiac MRI and quality assessment. In: Biomedical Image Synthesis and Simulation.
2022. Talking Head from Speech Audio using a Pre-trained Image Generator. MM '22: The 30th ACM International Conference on Multimedia
2022. Assessing Domain Adaptation Techniques for Mitosis Detection in Multi-scanner Breast Cancer Histopathology Images. MICCAI 2021
2022. On the practical parallel implementation of a monolithic fluid-structure interaction solver. Eleventh International Conference on Engineering Computational Technology 2022
2022. A Generative Framework for Predicting Myocardial Strain from Cine-Cardiac Magnetic Resonance Imaging.
2022. Localizing the Recurrent Laryngeal Nerve via Ultrasound with a Bayesian Shape Framework.
2022. A Process Cube based Approach of Process Mining in Analysing Frailty Progression Exploiting Electronic Frailty Index. 15th International Conference on Health Informatics
2022. Fine-grained differentiable physics: a yarn-level model for fabrics. International Conference on Learning Representation 2022
2022. Epistemic Uncertainty-Weighted Loss for Visual Bias Mitigation. 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)
2022. Towards Automated Quantification of the Tumour Microenvironment using Fully Convolutional Neural Networks. JOURNAL OF PATHOLOGY
2022. Agent with Tangent-Based Formulation and Anatomical Perception for Standard Plane Localization in 3D Ultrasound.
2022. Machine Learning for Risk Prediction of Oesophago-Gastric Cancer in Primary Care: Comparison with Existing Risk-Assessment Tools. Cancers. 14.20
2022. Faster than light (microscopy): superiority of digital pathology over microscopy for assessment of immunohistochemistry. Journal of Clinical Pathology.
2022. Predicting myocardial infarction through retinal scans and minimal personal information. Nature Machine Intelligence. 55-61 4
2022. Building Process-Oriented Data Science Solutions for Real-World Healthcare. International Journal of Environmental Research and Public Health. 19.14
2022. Dental Extractions under General Anesthesia: New Insights from Process Mining. JDR Clinical & Translational Research.
2022. The Pitfalls of Using Open Data to Develop Deep Learning Solutions for COVID-19 Detection in Chest X-Rays. MEDINFO 2021: One World, One Health – Global Partnership for Digital Innovation. 679-683 290
2022. Neurodevelopment: Maintaining function during circuit reconfiguration. Current Biology. R1226-R1228 32.21
2022. Viscoelastic scaling regimes for marginally-rigid fractal spring networks. Physical Review Letters. 129.1
2022. In silico study of hyposalivation and sugar exposure on biofilm dysbiosis. JADA Foundational Science.
2022. Three-dimensional micro-structurally informed in silico myocardium—Towards virtual imaging trials in cardiac diffusion weighted MRI. Medical Image Analysis. 102592-102592 82
2022. Experimental and simulation studies of the effect of surface roughness on corrosion behaviour of X65 carbon steel under intermittent oil/water wetting. Corrosion Science. 195
2022. Evaluating the safety and patient impacts of an Artificial Intelligence Command Centre in acute hospital care: A mixed-methods protocol. BMJ Open. 12.3
2022. Innovative informatics methods for process mining in health care. Journal of Biomedical Informatics. 104203-104203 134
2022. Process Mining for Healthcare: Characteristics and Challenges. Journal of Biomedical Informatics. 127
2022. Autonomous control for miniaturized mobile robots in unknown pipe networks. Frontiers in Robotics and AI. 9
2022. Design and evaluation of an interactive quality dashboard for national clinical audit data: a realist evaluation. Health and Social Care Delivery Research. 10.12
2022. Using set visualisation to find and explain patterns of missing values: a case study with NHS hospital episode statistics data. BMJ Open. e064887-e064887 12.11
2022. The DynAIRx Project Protocol: Artificial Intelligence for dynamic prescribing optimisation and care integration in multimorbidity. Journal of Multimorbidity and Comorbidity. 1-14 12
2022. A monolithic one-velocity-field optimal control formulation for fluid–structure interaction problems with large solid deformation. Journal of Fluids and Structures. 111
2022. To the emergency room and back again: Circular healthcare pathways for acute functional neurological disorders. Journal of the Neurological Sciences. 437
2022. Automatic 3D+t four-chamber CMR quantification of the UK biobank: integrating imaging and non-imaging data priors at scale. Medical Image Analysis. 80
2022. Learning to complete incomplete hearts for population analysis of cardiac MR images. Medical Image Analysis. 77
2022. A probabilistic deep motion model for unsupervised cardiac shape anomaly assessment. Medical Image Analysis. 75
2022. Cardiac segmentation on late gadolinium enhancement MRI: A benchmark study from multi-sequence cardiac MR segmentation challenge. Medical Image Analysis. 81
2022. How does spine segment shape affect intradiscal and facets contact pressure? An in-silico study.
2022. Contextual Barriers to Implementing Open Source Electronic Health Record Systems for Low and Lower-Middle Income Countries: Scoping Review (Preprint).
2022. Evolving finite elements for advection diffusion with an evolving
interface.
2022. Viscoelastic scaling regimes for marginally-rigid fractal spring
networks.
Duff L; Scarsbrook AF; Ravikumar N; Frood R; Mackie SL; Bailey M; Tarkin JM; Mason JC; Frangi A; Morgan AW (2022) Automated AI-assisted diagnosis of active aortitis using radiomic analysis of FDG PET-CT imaging Annual Congress of the European Association of Nuclear Medicine October
2021
2021. Process Mining on the Extended Event Log to Analyse the System Usage During Healthcare Processes (Case Study: The GP Tab Usage During Chemotherapy Treatments). In: Lecture Notes in Business Information Processing.
2021. Process Mining to Explore Variations in Endometrial Cancer Pathways from GP Referral to First Treatment. In: Mantas J; Stoicu-Tivadar L; Chronaki C; Hasman A; Weber P; Gallos P; Crișan-Vida M; Zoulias E; Chirila OS (eds.) Studies in Health Technology and Informatics. Studies in Health Technology and Informatics.
2021. Process Mining of Disease Trajectories: A Literature Review. In: Mantas J; Stoicu-Tivadar L; Chronaki C; Hasman A; Weber P; Gallos P; Crişan-Vida M; Zoulias E; Sorina Chirila O (eds.) Studies in Health Technology and Informatics.
2021. Image-Derived Phenotype Extraction for Genetic Discovery via Unsupervised Deep Learning in CMR Images. MICCAI 2021
2021. A Deep Discontinuity-Preserving Image Registration Network. Medical Image Computing and Computer Assisted Intervention – MICCAI 2021
2021. Statistical Dependency Guided Contrastive Learning for Multiple Labeling in Prenatal Ultrasound. 12th International Workshop, MLMI 2021, Held in Conjunction with MICCAI 2021
2021. Flip Learning: Erase to Segment. Medical Image Computing and Computer Assisted Intervention – MICCAI 2021
2021. Regional Lymph Node Microarchitecture After Chemotherapy in Oesophageal Cancer: Results from the UK MRC OE02 Trial. JOURNAL OF PATHOLOGY
2021. Process Mining of Disease Trajectories in MIMIC-III: A Case Study. 2nd International Conference on Process Mining (ICPM 2020)
2021. Style Curriculum Learning for Robust Medical Image Segmentation. MICCAI 2021
2021. Self Context and Shape Prior for Sensorless Freehand 3D Ultrasound Reconstruction.
2021. Patient Safety Informatics: Meeting the Challenges of Emerging Digital Health. MEDINFO2021
2021. Markerless 3D spatio-temporal reconstruction of microscopic swimmers from video. 25th International Conference on Pattern Recognition (ICPR 2020)
2021. Research Data for "In-silico trial of intracranial flow diverters replicates and expands insights from conventional clinical trials".
2021. Analysis of a Web-Based Dashboard to Support the Use of National Audit Data in Quality Improvement: Realist Evaluation. Journal of Medical Internet Research. 23.11
2021. A multi-scale brain map derived from whole-brain volumetric reconstructions. Nature. 105-110 591.7848
2021. Deep learning in medical image registration. Progress in Biomedical Engineering. 3
2021. Shape registration with learned deformations for 3D shape reconstruction from sparse and incomplete point clouds. Medical Image Analysis. 74
2021. Plasticity in gustatory and nociceptive neurons controls decision making in C. elegans salt navigation. Communications Biology. 4
2021. Inhibition Underlies Fast Undulatory Locomotion in Caenorhabditis elegans. eNeuro. 8.2
2021. A unified theory for continuous-in-time evolving finite element space approximations to partial differential equations in evolving domains. IMA Journal of Numerical Analysis. 1696-1845 41.3
2021. QualDash: Adaptable Generation of Visualisation Dashboards for
Healthcare Quality Improvement. IEEE Transactions on Visualization and Computer Graphics. 689-699 27.2
2021. Computational fluid dynamics analysis and optimisation of polymerase chain reaction thermal flow systems. Applied Thermal Engineering. 183.1
2021. Resilience of neural networks for locomotion. The Journal of Physiology. 3825-3840 599.16
2021. In silico modelling of hyposalivation and biofilm dysbiosis in root caries. Journal of Dental Research.
2021. Revealing the temperature effects on the corrosion behaviour of 2205 duplex stainless steel from passivation to activation in a CO2-containing geothermal environment. Corrosion Science. 187
2021. Are regulations safe? Reflections from developing a digital cancer decision support tool. JCO Clinical Cancer Informatics. 353-363 5
2021. Hidden labour: the skilful work of clinical audit data collection and its implications for secondary use of data via integrated health IT. BMC Health Services Research. 21
2021. Associations Between Anticholinergic Medication Exposure and Adverse Health Outcomes in Older People with Frailty: A Systematic Review and Meta-analysis. Drugs - Real World Outcomes. 431-458 8.4
2021. The Effect of Alignment on Peoples Ability to Judge Event Sequence Similarity. IEEE Transactions on Visualization and Computer Graphics.
2021. In-silico trial of intracranial flow diverters replicates and expands insights from conventional clinical trials. Nature Communications. 12
2021. Adapt Everywhere: Unsupervised Adaptation of Point-Clouds and Entropy Minimisation for Multi-modal Cardiac Image Segmentation. IEEE Transactions on Medical Imaging.
2021. An optimal control method for time-dependent fluid-structure interaction problems. Structural and Multidisciplinary Optimization. 1939-1962 64.4
2021. Super-Resolution of Cardiac MR Cine Imaging using Conditional GANs and Unsupervised Transfer Learning. Medical Image Analysis.
2021. Recovering from missing data in population imaging – Cardiac MR image imputation via conditional generative adversarial nets. Medical Image Analysis. 67
2021. A global benchmark of algorithms for segmenting the left atrium from late gadolinium-enhanced cardiac magnetic resonance imaging. Medical Image Analysis. 67
2021. The evolution and characterisation of the corrosion scales formed on 3Cr steel in CO2-containing conditions relevant to geothermal energy production. Corrosion Science. 183
2021. Deep action learning enables robust 3D segmentation of body organs in various CT and MRI images. Scientific Reports. 11.1
2021. Analysis of a Web-Based Dashboard to Support the Use of National Audit Data in Quality Improvement: Realist Evaluation (Preprint).
2021. Patient Safety Informatics: Meeting the Challenges of Emerging Digital Health (Preprint).
Best K; Alderson S; Alldred D; Bonnet L; Buchan I; Butters O; Farrin A; Foy R; Johnson O; McInerney C (2021) 825 Development Of The Anticholinergic Medication Index (ACMI) British Geriatrics Society Autumn Meeting
Mehdizadeh D; McInerney C; Zaman H; Marques I; Alldred DP; Clegg A; Johnson O; Petty D; Gardner P; Faisal M (2021) Do measures of frailty and anticholinergic burden improve quality of life predictions? Prescribing and Research in Medicines Management – PRIMM 32nd Annual Scientific Meeting
Sanghvi MM; Vargas JD; Suinesiaputra A; Bonazzola R; Attar R; Ravikumar N; Wong M; Naderi H; Petersen SE; Frangi AF (2021) THE ASSOCIATION BETWEEN CARDIOVASCULAR RISK FACTORS AND LEFT ATRIAL STRUCTURE AND PHASIC FUNCTION British Society of Cardiac Magnetic Resonance, pp. A11-A12
2020
2020. Imitation Learning Network for Fundus Image Registration Using a Divide-And-Conquer Approach. Bildverarbeitung für die Medizin
2020. The Effect of Data Augmentation on Classification of Atrial Fibrillation in Short Single-Lead ECG Signals Using Deep Neural Networks. ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)
2020. A Multi-level Approach for Identifying Process Change in Cancer Pathways. Business Process Management Workshops 2019
2020. Process Mining of Disease Trajectories: A Feasibility Study. 13th International Joint Conference on Biomedical Engineering Systems and Technologies
2020. Federated Simulation for Medical Imaging. MICCAI Medical Image Computing and Computer Assisted Interventions
2020. Requirements for a quality dashboard: Lessons from National Clinical Audits. AMIA 2019 Annual Symposium
2020. ForestNet – Automatic Design of Sparse Multilayer Perceptron Network Architectures Using Ensembles of Randomized Trees. ACPR 2019: Asian Conference on Pattern Recognition
2020. Automated Multi-sequence Cardiac MRI Segmentation Using Supervised Domain Adaptation. STACOM 2019: Statistical Atlases and Computational Models of the Heart. Multi-Sequence CMR Segmentation, CRT-EPiggy and LV Full Quantification Challenges
2020. A Three-Dimensional, One-Field, Fictitious Domain Method for Fluid-Structure Interactions. ICCS 2020: International Conference on Computational Science
2020. MeshingNet: A New Mesh Generation Method based on Deep Learning. ICCS 2020: International Conference on Computational Science
2020. Reaction Rate Governs the Viscoelasticity and Nanostructure of Folded Protein Hydrogels. Biomacromolecules. 4253-4260 21.10
2020. Rotatable microfluidic device for simultaneous study of bilateral chemosensory neurons in Caenorhabditis elegans. Microfluidics and Nanofluidics. 24.8
2020. 3D mapping from partial observations: An application to utility mapping. Automation in Construction. 117
2020. Anisotropic mechanical response of layered disordered fibrous materials. Physical Review E. 102.6
2020. The role of the longitudinal muscle in the anal sphincter complex: Implications for the Intersphincteric Plane in Low Rectal Cancer Surgery?. Clinical Anatomy. 567-577 33.4
2020. Using a Multi-Level Process Comparison for Process Change Analysis in Cancer Pathways. International Journal of Environmental Research and Public Health. 17.19
2020. Population‐specific modelling of between/within‐subject flow variability in the carotid arteries of the elderly. International Journal for Numerical Methods in Biomedical Engineering. 36.1
2020. Recommendations for enhancing the usability and understandability of process mining in healthcare. Artificial Intelligence in Medicine. 109
2020. How, in what contexts, and why do quality dashboards lead to improvements in care quality in acute hospitals? Protocol for a realist feasibility evaluation. BMJ Open. 10.2
2020. A stable finite element method for low inertia undulatory locomotion in three dimensions. Applied Numerical Mathematics. 422-445 156
2020. Mapping Ensembles of Trees to Sparse, Interpretable Multilayer Perceptron Networks. SN Computer Science. 1.5
2020. Large negative lymph nodes – a surrogate for immune activation in rectal cancer patients?. Pathology, Research and Practice. 216.9
2020. Histological 3D reconstruction and in vivo lineage tracing of the human endometrium. The Journal of Pathology. 440-451 251.4
2020. Spatio-temporal Multi-task Learning for Cardiac MRI Left Ventricle Quantification. IEEE Journal of Biomedical and Health Informatics. 1-1
2020. Fully Automated 3D Cardiac MRI Localisation and Segmentation Using Deep Neural Networks. Journal of Imaging. 6.7
2020. An energy stable one-field monolithic arbitrary Lagrangian-Eulerian formulation for fluid-structure interaction. Journal of Fluids and Structures. 98
2020. A decision support system for urban infrastructure inter-asset management employing domain ontologies and qualitative uncertainty-based reasoning. Expert Systems with Applications. 158
2020. Special Issue on Innovative informatics methods for process mining in health care. Journal of Biomedical Informatics.
2019
2019. General System Theory and the Use of Process Mining to Improve Care Pathways..
2019. Visual Analytics of Event Data using Multiple Mining Methods. EuroVis Workshop on Visual Analytics (EuroVA) 2019
2019. Semi-Automatic Cell Correspondence Analysis Using Iterative Point Cloud Registration. BVM 2019: Bildverarbeitung für die Medizin 2019
2019. Coronary Artery Plaque Characterization from CCTA Scans Using Deep Learning and Radiomics. Medical Image Computing and Computer Assisted Intervention – MICCAI 2019
2019. Process Mining in Frail Elderly Care: A Literature Review. HEALTHINF 2019
2019. Dilated Deeply Supervised Networks for Hippocampus Segmentation in MRI. BVM 2019: Bildverarbeitung für die Medizin
2019. A Divide-and-Conquer Approach Towards Understanding Deep Networks. MICCAI 2019: International Conference on Medical Image Computing and Computer-Assisted Intervention
2019. A Numerical Model for Random Fibre Networks. 9th International Conference on Numerical Methods and Applications (NMA 2018)
2019. The ClearPath Method for Care Pathway Process Mining and Simulation. BPM 2018: Business Process Management Workshops
2019. Mammographic breast density classification using a deep neural network: assessment based on inter-observer variability. SPIE Medical Imaging 2019
2019. Public services, personal data and machine learning: prospects for infrastructures and ecosystems. European Conference on Digital Government
2019. Predicting Plausible Human Purkinje Network Morphology from Simulations. CinC 2019
2019. Maximum Likelihood Estimation of Head Motion Using Epipolar Consistency. BVM 2019: Bildverarbeitung für die Medizin
2019. Using Miniature Visualizations of Descriptive Statistics to Investigate the Quality of Electronic Health Records. HEALTHINF 2019
2019. Dilated Convolutions in Neural Networks for Left Atrial Segmentation in 3D Gadolinium Enhanced-MRI. STACOM 2018: 9th Statistical Atlases and Computational Modelling of the Heart Workshop
2019. A 2D dilated residual U-net for multi-organ segmentation in thoracic CT. SegTHOR2019: 2019 Challenge on Segmentation of THoracic Organs at Risk in CT Images
2019. Process Mining in Primary Care: Avoiding Adverse Events Due to Hazardous Prescribing. MEDINFO 2019: 17th World Congress on Medical and Health Informatics
2019. Detection of Unseen Low-Contrast Signals Using Classic and Novel Model Observers. BVM 2019: Bildverarbeitung für die Medizin
2019. Pediatric Patient Surface Model Atlas Generation and X-Ray Skin Dose Estimation. BVM 2019: Bildverarbeitung für die Medizin 2019
2019. Multidisciplinary Software Design for the Routine Monitoring and Assessment of Pain in Palliative Care Services: The Development of PainCheck. JCO Clinical Cancer Informatics. 3
2019. Registration of vascular structures using a hybrid mixture model. International Journal of Computer Assisted Radiology and Surgery. 1507-1516 14.9
2019. Using Dashboard Networks to Visualize Multiple Patient Histories: A Design Study on Post-operative Prostate Cancer. IEEE Transactions on Visualization and Computer Graphics. 1615-1628 25.3
2019. Whole animal modeling: piecing together nematode locomotion. Current Opinion in Systems Biology Tursun B; Dupuy D (eds.). 150-160 13
2019. Variation in methods, results and reporting in electronic health record-based studies evaluating routine care in gout: A systematic review. PLoS ONE. 14.10
2019. The hierarchical emergence of worm-like chain behaviour from globular domain polymer chains. Soft Matter. 8778-8789 15.43
2019. Nonaffinity and Fluid-Coupled Viscoelastic Plateau for Immersed Fiber Networks. Physical Review Letters. 123.23
2019. Determination of Forming Limits in Sheet Metal Forming Using Deep Learning. MATERIALS. 12.7
2019. Shop Scheduling Problems with Pliable Jobs. Journal of Scheduling.
2019. The assessment of data quality issues for process mining in healthcare using Medical Information Mart for Intensive Care III, a freely available e-health record database. Health Informatics Journal. 1878-1893 25.4
2019. Staff expectations for the implementation of an electronic health record system: a qualitative study using normalisation process theory. BMC Medical Informatics and Decision Making. 19
2019. A framework for analysing learning health systems: Are we removing the most impactful barriers?. Learning Health Systems. 3.4
2019. Finding relevant free-text radiology reports at scale with IBM Watson Content Analytics: a feasibility study in the UK NHS. Journal of Biomedical Semantics. 10
2019. Generalised coherent point drift for group-wise multi-dimensional analysis of diffusion brain MRI data. Medical Image Analysis. 47-63 53
2019. A computational model for prediction of clot platelet content in flow-diverted intracranial aneurysms. Journal of Biomechanics. 7-13 91
2019. Highly integrated workflows for exploring cardiovascular conditions: Exemplars of precision medicine in Alzheimer's disease and aortic dissection. Morphologie. 148-160 103.343
2019. Fluid–structure interaction for highly complex, statistically defined, biological media: Homogenisation and a 3D multi-compartmental poroelastic model for brain biomechanics. Journal of Fluids and Structures. 91
2019. Energy Analysis for the One-Field Fictitious Domain Method for Fluid-Structure Interactions. Applied Numerical Mathematics. 165-182 140
2019. A theoretical and numerical investigation of a family of immersed finite element methods. Journal of Fluids and Structures. 91
2019. Web-based Visualisation for Look-Ahead Ground Imaging in Tunnel Boring Machines. Automation in Construction. 105
2019. Requirements specification for a quality dashboard for exploring National Clinical Audit data.
2018
2018. A set-based visual analytics approach to analyze retail data. 9th International EuroVis Workshop on Visual Analytics
2018. Towards Unsupervised Detection of Process Models in Healthcare. Medical Informatics Europe (MIE2018)
2018. Intraoperative Brain Shift Compensation Using a Hybrid Mixture Model.
2018. Preliminary Study Investigating Brain Shift Compensation using 3D CBCT Cerebral Vascular Images.
2018. An anthropomorphic deformable phantom for brain shift simulation. 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)
2018. From Taxonomy to Requirements: A Task Space Partitioning Approach. BELIV Workshop 2018
2018. A Data Quality Framework for Process Mining of Electronic Health Record Data. IEEE ICHI 2018
2018. Frangi-Net.
2018. Towards High-Throughput Lymphocyte Quantification in Haematoxylin Eosin Stained Biopsy Sections by Establishing an Image Analysis Pipeline. Maastricht Pathology 2018: 11th Joint Meeting of the British Division of the International Academy of Pathology and the Pathological Society of Great Britain & Ireland
2018. Process mining to explore variation in chemotherapy pathways for breast cancer patients. NCRI Cancer Conference 2018
2018. Process mining in oncology using the MIMIC-III dataset. International Conference on Data and Information Science (ICoDIS) 2017
2018. Multi-modal Synthesis of ASL-MRI Features with KPLS Regression on Heterogeneous Data. MICCAI 2018: 21st International Conference on Medical Image Computing and Computer Assisted Intervention
2018. Uncertainty Management for Rule-Based Decision Support Systems. ICTAI 2017: 29th IEEE International Conference on Tools with Artificial Intelligence
2018. A Multi-task Framework for Skin Lesion Detection and Segmentation.
2018. Classification of Breast Cancer Histology Images Using Transfer Learning.
2018. Comparative Analysis of Unsupervised Algorithms for Breast MRI Lesion Segmentation.
2018. SkinNet: A Deep Learning Framework for Skin Lesion Segmentation. 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)
2018. An Integrated Web-based Decision Support System for Inter-Asset Streetworks Management. 26th GIScience Research UK Conference (GISRUK)
2018. ATU-DSS: Knowledge-Driven Data Integration and Reasoning for Sustainable Subsurface Inter-Asset Management. The Semantic Web: ESWC 2018 Satellite Events
2018. Automated Reasoning for City Infrastructure Maintenance Decision Support. IJCAI-ECAI-18, the 27th International Joint Conference on Artificial Intelligence (IJCAI) and the 23rd European Conference on Artificial Intelligence (ECAI)
2018. Resolve Intraoperative Brain Shift as Imitation Game.
2018. Range Imaging for Motion Compensation in C-Arm Cone-Beam CT of Knees under Weight-Bearing Conditions. Journal of Imaging. 13-13 4.1
2018. Quantitative Myocardial Perfusion Imaging Versus Visual Analysis in Diagnosing Myocardial Ischemia. JACC: Cardiovascular Imaging. 711-718 11.5
2018. First Extended Catalogue of Galactic bubble infrared fluxes from WISE and Herschel surveys. Monthly Notices of the Royal Astronomical Society. 3671-3692 473.3
2018. Signatures of proprioceptive control in Caenorhabditis elegans locomotion. Philosophical Transactions of the Royal Society B: Biological Sciences. 373.1758
2018. Evolving surface finite element methods for random advection-diffusion
equations. SIAM/ASA Journal on Uncertainty Quantification. 1656-1684 6.4
2018. Perfusion-decellularization of human ear grafts enables ECM-based scaffolds for auricular vascularized composite tissue engineering. Acta Biomaterialia. 339-354 73
2018. Subject-specific multi-poroelastic model for exploring the risk factors associated with the early stages of Alzheimer's disease. Interface Focus. 8.1
2018. PETMiner - A visual analysis tool for petrophysical properties of core sample data. IEEE Transactions on Visualization and Computer Graphics. 1728-1741 24.5
2018. Process Mining in Cardiology: A Literature Review. International Journal of Bioscience, Biochemistry and Bioinformatics. 226-236 8.4
2018. Screening for Cognitive Impairment by Model-Assisted Cerebral Blood Flow Estimation. IEEE Transactions on Biomedical Engineering. 1654-1661 65.7
2018. Learning health systems: the research community awareness challenge. Journal of Innovation in Health Informatics. 038-040 25.1
2018. The Heimdall framework for supporting characterisation of learning health systems. Journal of Innovation in Health Informatics. 77-87 25.2
2018. Group-wise similarity registration of point sets using Student’s t-mixture model for statistical shape models. Medical Image Analysis. 156-176 44
2018. Preemptive models of scheduling with controllable processing times and of scheduling with imprecise computation: A review of solution approaches. European Journal of Operational Research. 795-818 266.3
2018. Scheduling problems with controllable processing times and a common deadline to minimize maximum compression cost. Journal of Global Optimization.
2018. Models and algorithms for energy-efficient scheduling with immediate start of jobs. Journal of Scheduling. 505-516 21.5
2018. Renal Cell Carcinoma Perfusion before and after Radiofrequency Ablation Measured with Dynamic Contrast Enhanced MRI: A Pilot Study. Diagnostics. 8.1
2018. An anomalous event detection and tracking method for a tunnel look-ahead ground prediction system. Automation in Construction. 216-225 91
2018. Process Mining in Primary Care: A Literature Review. Studies in Health Technology and Informatics Ugon A; Karlsson D; Klein GO; Moen A (eds.). 376-380 247
2018. Patient-specific coronary blood supply territories for quantitative perfusion analysis. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 137-154 6.2
Sykes SJ; Kingsbury SR; Conaghan PG; Rodriquez MP; Baxter PD; Johnson OA (2018) A Process Mining Approach to Discovering Cardiovascular Disease Trajectories Medical Informatics Europe (MIE) 2018
2017
2017. Improving Pattern Detection in Healthcare Process Mining using an Interval-based Event Selection Method. BPM: International Conference on Business Process Management, 2017
2017. A decision support system to proactively manage subsurface utilities. International Symposium for Next Generation Infrastructure
2017. Process Mining and Analytics for Care Pathways: Proposal for a Tutorial at ICHI2017. 5th IEEE International Conference on Healthcare Informatics (ICHI 2017)
2017. A C.elegans inspired robotic model for pothole detection. 31st Conference on Neural Information Processing Systems (NIPS 2017)
2017. MonAT: a VisualWeb-based Tool to Profile Health Data Quality. 10th International Conference on Health Informatics (HEALTHINF 2017)
2017. Generalised coherent point drift for group-wise registration of multi-dimensional point sets. Medical Image Computing and Computer Assisted Intervention - MICCAI 2017. 20th International Conference
2017. Process Mining Routinely Collected Electronic Health Records to Define Real-Life Clinical Pathways during Chemotherapy. International Journal of Medical Informatics. 32-41 103
2017. The impact of electrode resistance on the biogalvanic characterisation technique. Physiological Measurement. 101-115 38.2
2017. A new computational method for a model of C. elegans biomechanics:
Insights into elasticity and locomotion performance.
2017. MyWebSteps: Aiding Revisiting with a Visual Web History. Interacting with Computers. 530-551 29.4
2017. Real-Time Hyperbola Recognition and Fitting in GPR Data. IEEE Transactions on Geoscience and Remote Sensing. 51-62 55.1
2017. Coupled bulk-surface free boundary problems arising from a mathematical model of receptor-ligand dynamics. SIAM Journal on Mathematical Analysis. 360-397 49.1
2017. In silico modelling to differentiate the contribution of sugar frequency versus total amount in driving biofilm dysbiosis in dental caries. Scientific Reports. 7
2017. Development of an integrated electronic platform for patient self-report and management of adverse events during cancer treatment. Annals of Oncology. 2305-2311 28.9
2017. Quantitative fat and R2* mapping in vivo to measure lipid-rich necrotic core and intraplaque hemorrhage in carotid atherosclerosis. Magnetic Resonance in Medicine. 285-296 78.1
2017. Improved hybrid/GPU algorithm for solving cardiac electrophysiology problems on Purkinje networks. International Journal for Numerical Methods in Biomedical Engineering. 33.6
2017. Evaluation of wave delivery methodology for brain MRE: Insights from computational simulations. Magnetic Resonance in Medicine. 341-356 78.1
2017. The spatial distribution of star formation related to ionized regions throughout the Inner Galactic Plane. Astronomy and Astrophysics. 605
2017. Isogeometric approximation of cardiac electrophysiology models on surfaces: An accuracy study with application to the human left atrium. Computer Methods in Applied Mechanics and Engineering. 248-273 317
2017. Integrated Heart—Coupling multiscale and multiphysics models for the simulation of the cardiac function. Computer Methods in Applied Mechanics and Engineering. 345-407 314
2017. Virtual endovascular treatment of intracranial aneurysms: models and uncertainty. WIREs: Systems Biology and Medicine. 9.4
2017. Machine Speed Scaling by Adapting Methods for Convex Optimization with Submodular Constraints. INFORMS Journal on Computing. 724-736 29.4
2017. Visualization system requirements for data processing pipeline design and optimization. IEEE Transactions on Visualization and Computer Graphics. 2028-2041 23.8
2017. Three-dimensional reconstruction with serial whole-mount sections of oral tongue squamous cell carcinoma: a preliminary study. Journal of Oral Pathology and Medicine.
2017. A One-Field Monolithic Fictitious Domain Method for Fluid-Structure Interactions. Computer Methods in Applied Mechanics and Engineering. 1146-1168 317
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2007. The role of body wall muscles in C. elegans locomotion. Proceedings of the Seventh International Workshop on Information Processing in Cells and Tissues
2006. Insights into protein-protein interfaces using a Bayesian network prediction method. Interdisciplinary Statistics and Bioinformatics
2003. LiSA - fit for cooperative development. Sixth Workshop on Models and Algorithms for Planning and Scheduling Problems (MAPSP'03)
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2004. Towards a dynamical systems analysis of neuromodulation. From Animals to Animats 8: Proceedings of the Eighth International Conference on Simulation of Adaptive Behavior
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2000. A deformable model, incorporating expected structure information, for automatic 3D segmentation of complex anatomical structures. CARS 2000: Computer Assisted Radiology and Surgery 2000
2015. A Novel Approach for the Colour Deconvolution of Multiple Histological Stains. Medical Image Understanding and Analysis
2016. Virtual Immortality: Reanimating Characters from TV Shows. European Conference on Computer Vision
2014. Upper body pose estimation with temporal sequential forests. 2014 British Machine Vision Conference
2016. Personalizing Human Video Pose Estimation. IEEE Conference on Computer Vision and Pattern Recognition (CVPR)
2002. Minimizing nondecreasing separable objective functions for the unit-time open shop scheduling problem. Proceedings of the 8th International Workshop on Project Management and Scheduling (PMS'02)
2004. Two-machine open shop scheduling problem with controllable processing times. Ninth International Workshop on Project Management and Scheduling (PMS'04)
2006. Cognitive vision: integrating symbolic qualitative representations with computer vision. Cognitive Vision Systems: Sampling the Spectrum of Approaches
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2014. Effect of simplicity and attractiveness on route selection for different journey types. Spatial Cognition IX International Conference, Spatial Cognition 2014, Proceedings
2007. Towards a formalisation of care pathways to embody good practice in healthcare. eGovernment Workshop ’07 (eGOV07)
2013. Linguistic and statistically derived features for cause of death prediction from verbal autopsy text. 25th International Conference, GSCL
2012. The design of a visual history tool to help users refind information within a website. Advances in Information Retrieval, 34th European Conference on IR Research, ECIR 2012, Proceedings
2008. Using Teleporting, Awareness and Multiple Views to Improve Teamwork in Collaborative Virtual Environments. Proceedings of the 14th Eurographics Symposium on Virtual Environments (EGVE'08)
2008. Mobile group dynamics in large-scale collaborative virtual environments. IEEE VIRTUAL REALITY 2008, PROCEEDINGS
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2008. Using teleporting, awareness and multiple views to improve teamwork in collaborative virtual environments. 14th Eurographics Symposium on Virtual Environments
2016. An Ontology of Soil Properties and Processes. ISWC 2016: The 15th International Semantic Web Conference
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2016. An unfitted discontinuous Galerkin scheme for conservation laws on
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2016. Learning the Repair Urgency for a Decision Support System for Tunnel Maintenance. ECAI 2016: 22nd European Conference on Artificial Intelligence
2014. A framework for quantification of regional cardiac fibrosis from serial sections using 3D whole slide imaging. 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
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2014. Geological orientation measurements using an iPad: Method comparison. TPCG 2014 - Theory and Practice of Computer Graphics, Proceedings
2015. P08.29 Web-tool to assess the cost-effectiveness of chlamydia point-of-care tests at the local level. STI & HIV World Congress 2015
2010. Secure information extraction from clinical documents using SNOMED CT gazetteer and natural language processing. 2010 International Conference for Internet Technology and Secured Transactions (ICITST)
2010. Extracting the concepts in Clinical Documents using SNOMED-CT and GATE. Fourth i2b2/VA Shared-Task and Workshop Challenges in Natural Language Processing for Clinical Data
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2013. Evaluation of Machine Learning Techniques in Predicting Acute Coronary Syndrome Outcome. AI’2013 International Conference on Artificial Intelligence
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2005. Modelling process variety and best practice - an e-government example. UK Academy for Information Systems Conference 2005, Newcastle, March 22-24
2005. Best practice in local e-government: a process modelling approach. eGovernment Workshop '05 (eGOV05), Brunel University
2006. A level-set based medical image segmentation tool for the creation of spinal finite element models. 5th World Congress of Biomechanics
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2016. Process Mining in Oncology: a Literature Review. 2016 6th International Conference on Information Communication and Management (ICICM)
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2016. Electrophysiology model for a human heart with ischemic scar and realistic Purkinje network. STACOM 2015
2013. Reduction Strategies for Shape Dependent Inverse Problems in Haemodynamics.
2004. Changes in navigational behaviour produced by a wide field of view and a high fidelity visual scene. Proceedings of the 10th Eurographics Symposium on Virtual Environments (EGVE'04)
2015. Liver whole slide image analysis for 3D vessel reconstruction. IEEE International Symposium on Biomedical Imaging
2015. A 3D Primary Vessel Reconstruction Framework with Serial Microscopy Images. 18th International Conference on Medical Image Computing and Computer-Assisted Interventions (MICCAI)
2014. Point-of-care testing versus standard practice for chlamydia: a new approach to assessing the public health effect of rapid testing and treatment at local level. European Public Health Science Conference
2004. Automatic identification of key sub-structures for protein annotation. Proceedings of the 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences
2004. Automatic identification of key patterns within multiple protein structures. 12th International Conference on Intelligent Systems for Molecular Biology
2009. Colour Normalisation in Digital Histopathology Images. Optical Tissue Image Analysis in Microscopy, Histopathology and Endoscopy
2002. A qualitative, multi-scale grammar for image description and analysis. British Machine Vision Conference 2002
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2000. Detecting Lameness in Livestock using Resampling Condensation and Multi-stream Cyclic Hidden Markov Models.. BMVC2000 11th British Machine Vision Conference Volume 1
2001. Combining 3D deformable models and level set methods for the segmentation of abdominal aortic aneurysms. British Machine Vision Conference; 12th., Manchester, Sept. 2001
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2005. A computer based simulator for ultrasound guided needle procedure. Proceedings IEE International Conference on Visual Information Engineering
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2012. Using a high-resolution wall-sized virtual microscope to teach undergraduate medical students. CHI '12: CHI Conference on Human Factors in Computing Systems
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Kirby J; Law M; Pearson DJ; Johnson OA; Clamp SE; Hawker MD (2011) Teaching undergraduates using live clinical information systems: How to ensure you are delivering TD 19 ASME Annual Scientific Meeting